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List of Publications

[2008] [2007] [2006] [2005] [2004-2000] [1999-1995] [1994-1968]


2008

  • "Expression profiles and physiological roles of two types of molecular chaperonins from the@hyperthermophilic archaeon, Thermococcus kodakaraensis." S. Fujiwara, R. Aki, M. Yoshida, H. Higashibata, T. Imanaka, W. Fukuda, Appl. Environ. Microbiol., 74(23):7306-7312 (2008) [PubMed]

  • "An archaeal 2-deoxyribose 5-phosphate aldolase that exhibits closerhomology to bacteria rather than archaea." N. Rashid, H. Imanaka, T. Imanaka, J. Chem.Soc. Pak., 30, 740-749 (2008)

  • "Efficient degradation of grease using microorganisms." N. Rashid, T. Imanaka, J. Chem.Soc. Pak., 30, 612-617 (2008)

  • "Archaeal RNA polymerase subunits E and F are not required for transcription in vitro, but a Thermococcus kodakaraensis mutant lacking subunit F is temperature-senseitive." A. Hirata, T. Kanai, T. J. Santangelo, M. Tajiri, K. Manabe, J. N. Reeve, T. Imanaka, K. S. Murakami, Mol. Microbiol., 70(3):623-633 (2008) [PubMed]

  • "Expression profiles and physiological roles of two types of prefoldins from the hyperthermophilic archaeon Thermococcus kodakaraensis." A. Danno, W. Fukuda, M. Yoshida, R. Aki, T. Tanaka, T. Kanai, T. Imanaka, S. Fujiwara, J. Mol. Biol., 382(2):298-31 (2008) [PubMed]

  • "Agmatine is essential for the cell growth of Thermococcus kodakaraensis", W. Fukuda, N. Morimoto, T. Imanaka, S. Fujiwara, FEMS Microbiol. Lett., 287(1):113-120 (2008)[PubMed]

  • "Interaction force of chitin-binding domains onto chitin surface", Y. Kikkawa, H. Tokuhisa, H. Shingai, T. Hiraishi, H. Houjou, M.Kanesato, T. Imanaka, T. Tanaka, Biomacromolecules, 9(8):2126-2131 (2008)[PubMed]

  • "Efficient production of active form of recombinant cassava hydroxynitrile lyase using Escherichia coli in low-temperature culture", H. Semba, E. Ichige, T. Imanaka, H. Atomi, H. Aoyagi, Appl. Microbiol. Biotechnol., 79, 563-569 (2008) [PubMed]

  • "Stabilization of tRNA (m1G37) methyltransferase [TrmD] from Aquifex aeolicus by an intersubunit disulfide bond formation", T. Toyooka, T. Awai, T. Kanai, T. Imanaka, H. Hori, Genes to Cells, 13(8):807-816 (2008)[PubMed]

  • "Functional characterization of recombinant prefoldin complexes from a hyperthermophilic archaeon, Thermococcus sp. strain KS-1", R. Iizuka, Y. Sugano, N. Ide, A. Ohtaki, T. Yoshida, S. Fujiwara, T. Imanaka, and M. Yohda, J. Mol. Biol., 377(3):972-983 (2008) [PubMed]

  • "Polarity in archaeal operon transcription in Thermococcus kodakaraensis", T. Santangelo, L. Cubonova, R. Matsumi, H. Atomi,T. Imanaka, and J.N. Reeve, J. Bacteriol., 190(6):2244-2248 (2008)[PubMed]

  • "Efficient synthesis of trans-polyisoprene compounds using two thermostable enzymes in an organic-aqueous dual-liquid phase system", S. Fujiwara, A. Yamanaka, Y. Yamada, K. Hirooka, H. Higashibata, W. Fukuda, J. Nakayama, T. Imanaka, and E. Fukusaki, Biochem. Biophys. Res. Commun., 365(1):118-123 (2008) [PubMed]

  • "Effective approaches for the production of heterologous proteins using the Thermococcus kodakaraensis-based translation system", T. Endoh, T. Kanai, and T. Imanaka, J. Biotechnol., 133(2):177-182 (2008) [PubMed]

  • "Adaptation strategy of thermophiles towards hyperthermophily and their molecular bases", T. Imanaka, Bull. Chem. Soc. Japan., 81(2):171-182 (2008) [BCSJ]


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2007

  • "A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes", T. Kanai, J. Akerboom, S. Takedomi, H.J.G. van de Werken, F. Blombach, J. van der Oost, T. Murakami, H. Atomi, and T. Imanaka, J. Biol. Chem., 282(46):33659-33670 (2007) [PubMed]

  • "Crystallization and preliminary X-ray crystallographic study of [NiFe]-hydrogenase maturation factor HypE from Thermococcus kodakaraensis KOD1", T. Arai, S. Watanabe, R. Matsumi, H. Atomi,T. Imanaka, and K. Miki, Acta Crystallogrhaph. Sect. F., 63(Pt 9):765-767 (2007) [PubMed]

  • "Engineering of a Type III Rubisco from a hyperthermophilic archaeon aimed to enhance catalytic performance in mesophilic host cells", S. Yoshida, H. Atomi, and T. Imanaka, Appl. Environ.Microbiol., 73(19):6254-6261 (2007) [PubMed]

  • "A novel ADP-forming succinyl-CoA synthetase in Thermococcus kodakaraensis structurally related to the archaeal NDP-forming acetyl-CoA synthetases", K. Shikata, T. Fukui, H. Atomi, and T. Imanaka, J. Biol. Chem., 282(37):26963-26970 (2007) [PubMed]

  • "Methionine sulfoxide reductase from the hyperthermophilic archaeon Thermococcus kodakaraensis, an enzyme designed to function at sub-optimal growth temperatures", E. Fukushima, Y. Shinka, T. Fukui, H. Atomi, and T. Imanaka, J. Bacteriol., 189(19):7134-7144 (2007) [PubMed]
  • "Crystal structures of [NiFe] hydrogenise maturation proteins HypC and HypD, and HypE: Insights into cyanation reaction by thiol redox signaling", S. Watanabe, R. Matsumi, T. Arai, H. Atomi,T. Imanaka, and K. Miki, Mol. Cell, 27(1):29-40 (2007) [PubMed]

  • "Crystallization and preliminary X-ray crystallographic studies of the [NiFe] hydrogenise maturation proteins HypC and HypD", S. Watanabe, R. Matsumi, H. Atomi,T. Imanaka, and K. Miki, Acta Crystallogrhaph. Sect. F., 63(Pt6):538-541 (2007) [PubMed]

  • "Atomic force microscopy dissects the hierarchy of genome architectures in eukaryote, prokaryote, and chloroplast", R.L. Ohniwa, K. Morikawa, J. Kim, T. Kobori, K. Hizume, R. Matsumi, H. Atomi, T. Imanaka, T.Ohta, C. Wada, S.H. Yoshimura, and K. Takeyasu, Microsc. Microanal., 13, 3-12 (2007) [PubMed]

  • "Archaeal Type III Rubiscos function in a pathway for AMP metabolism", T. Sato, H. Atomi, and T. Imanaka, Science, 315(5814): 1003-1006 (2007) [Science HP] [PubMed]

  • "Gentisate 1,2-dioxygenase from Xanthobacter polyaromaticivorans 127W", S. Hirano, M. Morikawa, K. Takano, T. Imanaka, and S. Kanaya, Biosci. Biotechnol. Biochem., 71(1): 192-199 (2007) [PubMed]

  • "Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host/marker system based on antibiotic resistance", R. Matsumi, K. Manabe, T. Fukui, H. Atomi, and T. Imanaka, J. Bacteriol., 189(7):2683-2691(2007) [PubMed]

  • "A highly productive system for cell-free protein synthesis using a lysate of the hyperthermophilic archaeon, Thermococcus kodakaraensis", T. Endoh, T. Kanai, and T. Imanaka, Appl. Microbiol. Biotechnol., 74(5):1153-1161(2007) [PubMed]


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2006


  • "Phosphoenolpyruvate synthase plays an essential role for glycolysis in the modified Embden-Meyerhof pathway in Thermococcus kodakarensis", H. Imanaka, A. Yamatsu, T. Fukui, H. Atomi, and T. Imanaka, Mol. Microbiol., 61(4):898-909 (2006) [PubMed]

  • "The concept of the alpha-amylase family: a rational tool for interconverting glucanohydrolases/glucanotransferases, and their specificities", T. Kuriki, H. Takata, M. Yanase, K. Ohdan, K. Fujii, Y. Terada, T. Takaha, H. Hondoh, Y. Matsuura, and T. Imanaka, J. Appl. Glycosci., 53, 155-161 (2006) [PDF]

  • "A novel branching enzyme of the GH-57 family in the hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1", T. Murakami, T. Kanai, H. Takata, T. Kuriki, and T. Imanaka, J. Bacteriol., 188(16):5915-5924 (2006) [PubMed]

  • "The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis", I. Orita, T. Sato, H. Yurimoto, N. Kato, H. Atomi, T. Imanaka, and Y. Sakai, J. Bacteriol., 188(13): 4698-4706 (2006) [PubMed]

  • "Gene cloning and in vivo characterization of a dibenzothiophene dioxygenase from Xanthobacter polyaromaticivorans", S. Hirano, M. Haruki, K. Takano, T. Imanaka, M. Morikawa, and S. Kanaya, Appl. Microbiol. Biotechnol., 69(6): 672-681 (2006) [PubMed]

  • "Cell-free protein synthesis at high temperatures using the lysate of a hyperthermophile", T. Endoh, T. Kanai, Y. T. Sato, D. V. Liu, K. Yoshikawa, H. Atomi, and T. Imanaka, J. Biotechnol., 126(2): 186-195 (2006) [PubMed]
  • "Identification of the amino acid residues essential for proteolytic activity in an archaeal signal peptide peptidase", R. Matsumi, H. Atomi, and T. Imanaka, J. Biol. Chem., 281(15): 10533-10539 (2006) [PubMed]

  • "Phototrophic growth of a Rubisco-deficient mesophilic purple nonsulfur bacterium harboring a Type III Rubisco from a hyperthermophilic archaeon", S. Yoshida, M. Inui, H. Yukawa, T. Kanao, K. Tomizawa, H. Atomi, and T. Imanaka, J. Biotechnol., 124(3): 532-544 (2006) [PubMed]

  • "Isolation and characterization of a novel poly(vinyl alcohol)-degrading bacterium, Sphingopyxis sp. PVA3.", A. Yamatsu, R. Matsumi, H. Atomi, and T. Imanaka, Appl. Microbiol. Biotechnol., 72(4):804-811 (2006) [PubMed]

  • "Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1" H. Matsumura, H. Takahashi, T. Inoue, T. Yamamoto, H. Hashimoto, M. Nishioka, S. Fujiwara, M. Takagi, T. Imanaka, and Y. Kai, Proteins, 63(3): 711-715 (2006) [PubMed]


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2005

  • "Biochemical properties of a putative signal peptide peptidase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1" R. Matsumi, H. Atomi, and T. Imanaka, J. Bacteriol., 187(20): 7072-7080 (2005) [PubMed]

  • "Characterization of a novel glucosamine-6-phosphate deaminase from a hyperthermophilic archaeon" T. Tanaka, F. Takahashi, T. Fukui, S. Fujiwara, H. Atomi, and T. Imanaka, J. Bacteriol., 187(20): 7038-7044 (2005) [PubMed]

  • "Cyclization reaction catalyzed by Bacillus cereus branching enzyme, and the structure of cyclic glucan produced by the enzyme from amylose" H. Takata, T. Kato, M. Takagi and T. Imanaka, J. Appl. Glycosci., 52(4): 359-365 (2005) [PDF]

  • "Thermostable direct hemolysin of Vibrio parahaemolyticus is a bacterial reversible amyloid toxin" T. Fukui, K. Shiraki, D. Hamada, K. Hara, T. Miyata, S. Fujiwara, K. Mayanagi, K. Yanagihara, T. Iida, E. Fukusaki, T. Imanaka, T. Honda, and I. Yanagihara, Biochemistry, 44(29): 9825-9832 (2005) [PubMed]

  • "Unfolding mechanism of a hyperthermophilic protein O6-methylguanine-DNA methyltransferase", S. Nishikori, K. Shiraki, S. Fujiwara, T. Imanaka and M. Takagi, Biophys Chem., 116(2):97-104 (2005) [PubMed]

  • "Structural mechanism for coordination of proofreading and polymerase activities in archaeal DNA polymerases" T. Kuroita, H. Matsumura, N. Yokota, M. Kitabayashi, H. Hashimoto, T., Inoue, T. Imanaka, and Y. Kai, J. Mol. Biol., 351(2) :291-298 (2005) [PubMed]

  • "Expression of acetylcholine (ACh) and ACh-synthesizing activity in Archaea", T. Yamada, T. Fujii, T. Kanai, T. Amo, T. Imanaka, H. Nishimasu, T. Wakagi, H. Shoun, M. Kamekura, Y. Kamagata, T. Kato, and K. Kawashima, Life Sci., 77(16):1935-1944 (2005) [PubMed]

  • "Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: An implication for the formation of a near-seven-fold helical assembly", T. Akiba, N. Ishii, N. Rashid, M. Morikawa, T. Imanaka, and K. Harata, Nucleic Acids Res., 33(10): 3412-3423 (2005) [PubMed]

  • "Comparison of dibenzothiophene-degrading bacteria under low oxygen conditions", F. Kitauchi, S. Hirano, M. Haruki, T. Imanaka, M. Morikawa, and S. Kanaya, J. Environ. Biotechnol., 4: 117-120 (2005)

  • "Allophanate hydrolase of Oleomonas sagaranensis involved in an ATP-dependent degradation pathway specific to urea" T. Kanamori, N. Kanou, S. Kusakabe, H. Atomi, and T. Imanaka, FEMS Microbiol. Lett., 245(1): 61-65 (2005) [PubMed]
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  • "Enzymatic and structural characterization of type II isopentenyl diphosphate isomerase from hyperthermophilic archaeon Thermococcus kodakaraensis",M. A. Siddiqui, A. Yamanaka, K. Hirooka, T. Bamaba, A. Kobayashi, T. Imanaka, E. Fukusaki, and S. Fujiwara, Biochem. Biophys. Res. Commun., 331(4):1127-1136 (2005) [PubMed]

  • "Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis", T. Sato, T. Fukui, H. Atomi, and T. Imanaka, Appl. Environ. Microbiol., 71(7):3889-3899 (2005) [PubMed]

  • "Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes", T. Fukui, H. Atomi, T. Kanai, R. Matsumi, S. Fujiwara, and T. Imanaka, Genome Res., 15(3): 352-363 (2005) [PubMed]

  • "Characterization of an archaeal malic enzyme from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1", W. Fukuda, Y. S. Ismail, T. Fukui, H. Atomi, and T. Imanaka, Archaea, 1(5):293-301 (2005) [PubMed] [Archaea HP]

  • "Continuous hydrogen production by the hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1", T. Kanai, H. Imanaka, A. Nakajima, K. Uwamori, Y. Omori, T. Fukui, H. Atomi, and T. Imanaka, J. Biotechnol., 116(3): 271-282 (2005) [PubMed]


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